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Nt2-CTD domains of the TssA component from the type VI secretion system of Aeromonas hydrophila.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 280 0.2 M sodium acetate, 0.1 M sodium citrate (pH 5.5), and 10 % (w/v) PEG 4000
Crystal Properties Matthews coefficient Solvent content 3.32 63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.034 α = 90 b = 202.076 β = 90.72 c = 139.013 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97623 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.13 202.08 99.9 0.113 0.077 5.8 3.7 67977
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.13 3.21
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.13 202.08 64474 3380 99.79 0.25856 0.25511 0.32758 0.2992 RANDOM 97.066
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 8.18 -5.04 -5.11 -2.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.498 r_long_range_B_refined 14.777 r_long_range_B_other 14.777 r_dihedral_angle_3_deg 13.876 r_dihedral_angle_4_deg 10.993 r_mcangle_it 10.724 r_mcangle_other 10.723 r_scangle_other 9.646 r_mcbond_it 6.618 r_mcbond_other 6.618
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.498 r_long_range_B_refined 14.777 r_long_range_B_other 14.777 r_dihedral_angle_3_deg 13.876 r_dihedral_angle_4_deg 10.993 r_mcangle_it 10.724 r_mcangle_other 10.723 r_scangle_other 9.646 r_mcbond_it 6.618 r_mcbond_other 6.618 r_scbond_it 5.643 r_scbond_other 5.643 r_dihedral_angle_1_deg 3.316 r_angle_refined_deg 1.599 r_angle_other_deg 0.905 r_chiral_restr 0.091 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18363 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction pointless data scaling PHASER phasing