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Nt2 domain of the TssA component from the type VI secretion system of Aeromonas hydrophila.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 290 0.2 M Sodium chloride, 0.1 M HEPES buffer (pH 7.0), and 20% (w/v) PEG 6,000
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.848 α = 90 b = 101.316 β = 104.63 c = 78.432 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2017-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 101.32 99.9 0.065 0.039 7 3.6 59629 19.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.76 1.79
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.76 101.32 56717 2805 99.7 0.27382 0.27227 0.2676 0.30575 0.3046 RANDOM 22.743
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.83 0.03 -1.24 1.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.784 r_dihedral_angle_4_deg 16.011 r_dihedral_angle_3_deg 12.929 r_long_range_B_refined 5.589 r_dihedral_angle_1_deg 5.546 r_long_range_B_other 5.501 r_scangle_other 4.348 r_scbond_it 2.848 r_scbond_other 2.848 r_mcangle_it 2.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.784 r_dihedral_angle_4_deg 16.011 r_dihedral_angle_3_deg 12.929 r_long_range_B_refined 5.589 r_dihedral_angle_1_deg 5.546 r_long_range_B_other 5.501 r_scangle_other 4.348 r_scbond_it 2.848 r_scbond_other 2.848 r_mcangle_it 2.59 r_mcangle_other 2.589 r_mcbond_it 1.801 r_mcbond_other 1.801 r_angle_refined_deg 1.702 r_angle_other_deg 1.025 r_chiral_restr 0.099 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4584 Nucleic Acid Atoms Solvent Atoms 380 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction pointless data scaling PHASER phasing