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Structure of CYP1232A24 from Arthrobacter sp.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VZ7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 0.1 M Bis-tris pH 6.5; 20% PEG 5000 MME
Crystal Properties Matthews coefficient Solvent content 2.35 47.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.39 α = 90 b = 100.83 β = 97.85 c = 53.42 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 PIXEL DECTRIS PILATUS 6M-F 2017-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91587 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 52.92 97.6 0.19 0.16 0.94 4.5 4.1 44239 18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.74 95.8 0.69 0.61 0.55 1.2 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2VZ7 1.7 50.42 42041 2167 97.46 0.19153 0.18965 0.2002 0.22807 0.2351 RANDOM 25.716
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.18 0.04 2.9 -1.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.969 r_dihedral_angle_4_deg 14.613 r_dihedral_angle_3_deg 12.982 r_dihedral_angle_1_deg 5.907 r_long_range_B_refined 4.751 r_long_range_B_other 4.751 r_scangle_other 3.465 r_mcangle_other 2.419 r_mcangle_it 2.415 r_scbond_it 2.347
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.969 r_dihedral_angle_4_deg 14.613 r_dihedral_angle_3_deg 12.982 r_dihedral_angle_1_deg 5.907 r_long_range_B_refined 4.751 r_long_range_B_other 4.751 r_scangle_other 3.465 r_mcangle_other 2.419 r_mcangle_it 2.415 r_scbond_it 2.347 r_scbond_other 2.345 r_mcbond_it 1.746 r_mcbond_other 1.726 r_angle_refined_deg 1.532 r_angle_other_deg 0.897 r_chiral_restr 0.099 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3029 Nucleic Acid Atoms Solvent Atoms 234 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing