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Structure of the UB2H domain of E.coli PBP1B in complex with LpoB
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 400 uM [U-13C; U-15N] UB2H domain, 480 uM None LpoB 90% H2O and 10% D2O 210 mM 7.5 1 atm 293 Bruker AVANCE 700 2 3D HNCO 400 uM [U-13C; U-15N] UB2H domain, 480 uM None LpoB 90% H2O and 10% D2O 210 mM 7.5 1 atm 293 Bruker AVANCE 700 3 3D HN(CA)CO 400 uM [U-13C; U-15N] UB2H domain, 480 uM None LpoB 90% H2O and 10% D2O 210 mM 7.5 1 atm 293 Bruker AVANCE 700 4 3D BESTROSY-HNCACB 400 uM [U-13C; U-15N] UB2H domain, 480 uM None LpoB 90% H2O and 10% D2O 210 mM 7.5 1 atm 293 Bruker AVANCE III 850 5 3D BESTROSY-HN(CO)CACB 400 uM [U-13C; U-15N] UB2H domain, 480 uM None LpoB 90% H2O and 10% D2O 210 mM 7.5 1 atm 293 Bruker AVANCE III 850 6 2D 1H-13C HSQC aliphatic 400 uM [U-13C; U-15N] UB2H domain, 480 uM None LpoB 90% H2O and 10% D2O 210 mM 7.5 1 atm 293 Bruker AVANCE III 850 7 2D 1H-13C HSQC aromatic 400 uM [U-13C; U-15N] UB2H domain, 480 uM None LpoB 90% H2O and 10% D2O 210 mM 7.5 1 atm 293 Bruker AVANCE III 850 8 3D HCCH-TOCSY 400 uM [U-13C; U-15N] UB2H domain, 480 uM None LpoB 90% H2O and 10% D2O 210 mM 7.5 1 atm 293 Bruker AVANCE III 850 9 3D HCCH-TOCSY 400 uM [U-13C; U-15N] UB2H domain, 480 uM None LpoB 90% H2O and 10% D2O 210 mM 7.5 1 atm 293 Bruker AVANCE III 850 10 3D 1H-15N NOESY 400 uM [U-13C; U-15N] UB2H domain, 480 uM None LpoB 90% H2O and 10% D2O 210 mM 7.5 1 atm 293 Bruker US2 950 11 3D 1H-13C NOESY aliphatic 400 uM [U-13C; U-15N] UB2H domain, 480 uM None LpoB 90% H2O and 10% D2O 210 mM 7.5 1 atm 293 Bruker US2 950 12 3D 1H-13C NOESY aromatic 400 uM [U-13C; U-15N] UB2H domain, 480 uM None LpoB 90% H2O and 10% D2O 210 mM 7.5 1 atm 293 Bruker AVANCE III 850
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 2 Bruker AVANCE 700 4 Bruker AVANCE III 850 3 Bruker US2 950
NMR Refinement Method Details Software simulated annealing ARIA
NMR Ensemble Information Conformer Selection Criteria 20 Conformers Calculated Total Number 750 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure calculation ARIA 2.3 Rieping W., Habeck M., Bardiaux B., Bernard A , Nilges M. 2 refinement CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read 3 chemical shift assignment CcpNmr Analysis 2.4 CCPN 4 data analysis TALOS+ Yang Shen, Frank Delaglio, Gabriel Cornilescu, and Ad Bax 5 structure calculation UNIO 2.0.2 Torsten Herrmann 6 data analysis NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 7 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax