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Amine Dehydrogenase from Petrotoga mobilis; open form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.1 M Bis-tris pH 6.5 0.8M Li2SO4
Crystal Properties Matthews coefficient Solvent content 2.87 57.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.038 α = 90 b = 82.038 β = 90 c = 217.409 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 PIXEL DECTRIS PILATUS 6M-F 2017-08-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91587 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 71.04 99.2 0.06 0.02 1 34.7 23.6 41623 22
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.83 0.7 0.3 0.99 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.79 71.04 39218 2032 98.82 0.16051 0.15866 0.1728 0.19617 0.2022 RANDOM 30.508
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.16 0.58 1.16 -3.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 47.763 r_dihedral_angle_3_deg 12.2 r_long_range_B_other 7.028 r_long_range_B_refined 7.027 r_dihedral_angle_4_deg 6.719 r_dihedral_angle_1_deg 6.204 r_scangle_other 6.042 r_scbond_it 4.257 r_scbond_other 4.247 r_mcangle_it 3.204
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 47.763 r_dihedral_angle_3_deg 12.2 r_long_range_B_other 7.028 r_long_range_B_refined 7.027 r_dihedral_angle_4_deg 6.719 r_dihedral_angle_1_deg 6.204 r_scangle_other 6.042 r_scbond_it 4.257 r_scbond_other 4.247 r_mcangle_it 3.204 r_mcangle_other 3.203 r_mcbond_other 2.627 r_mcbond_it 2.626 r_angle_refined_deg 2.059 r_angle_other_deg 1.089 r_chiral_restr 0.136 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2595 Nucleic Acid Atoms Solvent Atoms 305 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling CRANK phasing