☰ Navigation Tabs
BEAT Fc with improved heterodimerization (Q3A-D84.4Q)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5M3V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293.15 CRYSTALS GROWN BY VAPOR DIFFUSION BY MIXING 12.0 MG/ML PROTEIN IN 10 MM HEPES PH8.0, 100 MM NACL, 1 MM EDTA, EQUALLY WITH 33.00 %(W/V) PEG 1500
Crystal Properties Matthews coefficient Solvent content 2.47 50.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.65 α = 90 b = 73.02 β = 90 c = 140.93 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93.15 PIXEL DECTRIS PILATUS3 2M 2015-11-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.966 ESRF MASSIF-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 30 99.5 0.08 0.09 0.041 8.5 4.3 40305
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 1.98 0.622 0.707 0.332
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5M3V 1.88 30 40305 1976 99.35 0.23329 0.2313 0.2436 0.27247 0.2833 RANDOM 56.123
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.25 -1.7 3.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.24 r_dihedral_angle_3_deg 14.379 r_dihedral_angle_4_deg 13.904 r_dihedral_angle_1_deg 9.593 r_long_range_B_refined 8.592 r_long_range_B_other 8.309 r_scangle_other 1.953 r_mcangle_it 1.406 r_mcangle_other 1.405 r_angle_refined_deg 1.372
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.24 r_dihedral_angle_3_deg 14.379 r_dihedral_angle_4_deg 13.904 r_dihedral_angle_1_deg 9.593 r_long_range_B_refined 8.592 r_long_range_B_other 8.309 r_scangle_other 1.953 r_mcangle_it 1.406 r_mcangle_other 1.405 r_angle_refined_deg 1.372 r_scbond_it 1.312 r_scbond_other 1.312 r_angle_other_deg 0.855 r_mcbond_it 0.851 r_mcbond_other 0.851 r_chiral_restr 0.071 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3318 Nucleic Acid Atoms Solvent Atoms 319 Heterogen Atoms 220
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing