☰ Navigation Tabs
X-RAY STRUCTURE OF CLK3-KD(GP-[275-632], NON-PHOS.)/Cpd-2 AT 1.42A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6FYP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 25% PEG4000, 0.1M HEPES
Crystal Properties Matthews coefficient Solvent content 2.2 44.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.932 α = 90 b = 44.929 β = 114.82 c = 83.635 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.00003 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 19.52 98 0.049 0.058 0.999 14.2 3.4 68259 20.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.46 96.2 0.453 0.537 0.82 2.7 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6FYP 1.42 19.52 64846 3413 98.14 0.1767 0.1761 0.174 0.1892 0.1876 RANDOM 16.848
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.16 -0.16 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.722 r_dihedral_angle_4_deg 19.461 r_dihedral_angle_3_deg 11.406 r_dihedral_angle_1_deg 5.163 r_sphericity_free 2.17 r_sphericity_bonded 1.849 r_angle_refined_deg 1.078 r_rigid_bond_restr 0.861 r_chiral_restr 0.077 r_bond_refined_d 0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.722 r_dihedral_angle_4_deg 19.461 r_dihedral_angle_3_deg 11.406 r_dihedral_angle_1_deg 5.163 r_sphericity_free 2.17 r_sphericity_bonded 1.849 r_angle_refined_deg 1.078 r_rigid_bond_restr 0.861 r_chiral_restr 0.077 r_bond_refined_d 0.007 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2935 Nucleic Acid Atoms Solvent Atoms 529 Heterogen Atoms 27
Software Software Software Name Purpose XDS data reduction XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction