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ASH / PapD-like domain of human CEP192 (PapD-like domain 7)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 292 100 mM Na-Citrate, pH 5.5, 30 % (v/v) PEG-400, 100 mM NaCl, 100 mM MgCl2
Crystal Properties Matthews coefficient Solvent content 2.25 45.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.7 α = 90 b = 60.06 β = 90 c = 64.11 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2015-04-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.72932 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1 23.03 98.8 0.071 0.074 0.019 0.999 18.2 14.8 82358
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1 1.02 97.2 1.376 1.425 0.368 0.678 14.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1 23.03 78331 3965 98.57 0.1372 0.1364 0.1364 0.1518 0.1518 RANDOM 15.199
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.33 -0.53 0.2
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 30.818 r_dihedral_angle_2_deg 27.22 r_sphericity_bonded 26.946 r_dihedral_angle_4_deg 16.575 r_dihedral_angle_3_deg 13.346 r_dihedral_angle_1_deg 6.967 r_rigid_bond_restr 1.905 r_angle_refined_deg 1.827 r_angle_other_deg 1.073 r_chiral_restr 0.11
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 30.818 r_dihedral_angle_2_deg 27.22 r_sphericity_bonded 26.946 r_dihedral_angle_4_deg 16.575 r_dihedral_angle_3_deg 13.346 r_dihedral_angle_1_deg 6.967 r_rigid_bond_restr 1.905 r_angle_refined_deg 1.827 r_angle_other_deg 1.073 r_chiral_restr 0.11 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1111 Nucleic Acid Atoms Solvent Atoms 215 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction MOSFLM data reduction CRANK phasing