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Complement factor D in complex with the inhibitor (S)-3'-(aminomethyl)-N-(1,2,3,4-tetrahydronaphthalen-1-yl)-[1,1'-biphenyl]-3-carboxamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 22-25% PEG3350, 100 mM HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 3.06 59.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.225 α = 90 b = 77.041 β = 90 c = 84.898 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2008-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.00 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.46 57.1 98 15.1 5.68 52456
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.46 1.51 0.512 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.5 57.05 45998 2421 98.18 0.15908 0.15779 0.1577 0.18382 0.1835 RANDOM 14.489
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 -0.07 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.197 r_dihedral_angle_4_deg 17.55 r_dihedral_angle_3_deg 12.732 r_dihedral_angle_1_deg 6.488 r_long_range_B_refined 6.369 r_long_range_B_other 6.095 r_scangle_other 4.745 r_scbond_it 3.145 r_scbond_other 3.127 r_angle_refined_deg 2.469
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.197 r_dihedral_angle_4_deg 17.55 r_dihedral_angle_3_deg 12.732 r_dihedral_angle_1_deg 6.488 r_long_range_B_refined 6.369 r_long_range_B_other 6.095 r_scangle_other 4.745 r_scbond_it 3.145 r_scbond_other 3.127 r_angle_refined_deg 2.469 r_mcangle_it 2.326 r_mcangle_other 2.325 r_mcbond_it 1.652 r_mcbond_other 1.606 r_angle_other_deg 1.213 r_chiral_restr 0.151 r_bond_refined_d 0.026 r_gen_planes_refined 0.012 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1700 Nucleic Acid Atoms Solvent Atoms 318 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing