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Complement factor D in complex with the inhibitor N-(3'-(aminomethyl)-[1,1'-biphenyl]-3-yl)-3-methylbutanamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 22-25% PEG3350, 100 mM HEPES pH 7.5, 2 mM inhibitor
Crystal Properties Matthews coefficient Solvent content 2.97 58.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.662 α = 90 b = 210.535 β = 90 c = 143.521 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2008-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.00 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 83.05 100 10 6.14 83798
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.32
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.25 71.76 79605 4190 99.95 0.21892 0.21761 0.2215 0.24388 0.2452 RANDOM 45.821
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.2 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.55 r_dihedral_angle_4_deg 18.816 r_dihedral_angle_3_deg 16.597 r_dihedral_angle_1_deg 13.124 r_long_range_B_other 9.971 r_long_range_B_refined 9.966 r_scangle_other 7.281 r_mcangle_it 6.255 r_mcangle_other 6.255 r_scbond_it 4.654
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.55 r_dihedral_angle_4_deg 18.816 r_dihedral_angle_3_deg 16.597 r_dihedral_angle_1_deg 13.124 r_long_range_B_other 9.971 r_long_range_B_refined 9.966 r_scangle_other 7.281 r_mcangle_it 6.255 r_mcangle_other 6.255 r_scbond_it 4.654 r_scbond_other 4.653 r_mcbond_it 3.941 r_mcbond_other 3.935 r_angle_refined_deg 1.787 r_angle_other_deg 1.028 r_chiral_restr 0.102 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10234 Nucleic Acid Atoms Solvent Atoms 257 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing