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Complement factor D in complex with the inhibitor 3-((3-((3-(aminomethyl)phenyl)amino)-1H-pyrazolo[3,4-d]pyrimidin-4-yl)amino)phenol
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 25% PEG3350, 100 mM TRIS pH 8.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.523 α = 95.21 b = 68.482 β = 116.7 c = 73.38 γ = 102.43
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2010-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.21 50.8 94.3 13.3 2 52329
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.21 2.28 0.237 3.33
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.21 46.11 49708 2617 94.64 0.22316 0.22127 0.2254 0.25905 0.2644 RANDOM 42.556
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.01 -0.07 0.31 -0.27 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.831 r_dihedral_angle_4_deg 16.364 r_dihedral_angle_3_deg 15.969 r_long_range_B_refined 8.356 r_long_range_B_other 8.348 r_dihedral_angle_1_deg 5.997 r_scangle_other 5.795 r_mcangle_it 5.236 r_mcangle_other 5.235 r_scbond_it 3.745
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.831 r_dihedral_angle_4_deg 16.364 r_dihedral_angle_3_deg 15.969 r_long_range_B_refined 8.356 r_long_range_B_other 8.348 r_dihedral_angle_1_deg 5.997 r_scangle_other 5.795 r_mcangle_it 5.236 r_mcangle_other 5.235 r_scbond_it 3.745 r_scbond_other 3.744 r_mcbond_it 3.458 r_mcbond_other 3.458 r_angle_refined_deg 1.671 r_angle_other_deg 1.017 r_chiral_restr 0.085 r_bond_refined_d 0.012 r_gen_planes_other 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9568 Nucleic Acid Atoms Solvent Atoms 285 Heterogen Atoms 156
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing