☰ Navigation Tabs
Periplasmic coiled coil domain of the FapF amyloid transporter
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.2 M Zinc acetate dihydrate, 0.1 M Sodium cacodylate, pH 6.5, 10 % v/v 2-Propanol
Crystal Properties Matthews coefficient Solvent content 2.44 49.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.59 α = 90.24 b = 37.7 β = 108.95 c = 57.34 γ = 119.89
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2017-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.976 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 32.01 93.45 0.0303 0.027 0.9983 13.86 1.99 22562 29.737
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.78 1.81 93.5 0.309 0.42 0.282 0.833 2.4 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.78 32.01 21454 1106 93.47 0.20923 0.20689 0.2185 0.24797 0.245 RANDOM 37.796
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.64 0.24 -0.38 0.77 -0.4 -0.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.281 r_dihedral_angle_4_deg 18.475 r_dihedral_angle_3_deg 15.877 r_long_range_B_refined 10.126 r_long_range_B_other 10.125 r_scangle_other 7.336 r_dihedral_angle_1_deg 5.264 r_mcangle_other 4.811 r_mcangle_it 4.81 r_scbond_it 4.799
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.281 r_dihedral_angle_4_deg 18.475 r_dihedral_angle_3_deg 15.877 r_long_range_B_refined 10.126 r_long_range_B_other 10.125 r_scangle_other 7.336 r_dihedral_angle_1_deg 5.264 r_mcangle_other 4.811 r_mcangle_it 4.81 r_scbond_it 4.799 r_scbond_other 4.796 r_mcbond_it 3.573 r_mcbond_other 3.559 r_angle_refined_deg 1.856 r_angle_other_deg 1.091 r_chiral_restr 0.114 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1786 Nucleic Acid Atoms Solvent Atoms 273 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MoRDa phasing