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Crystal structure of an (R)-selective amine transaminase from Exophiala xenobiotica
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.7 293 2 M Ammoniumsulphate, 0.1 M Sodium acetate pH 4.7
Crystal Properties Matthews coefficient Solvent content 2.13 42.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.431 α = 90 b = 148.452 β = 90 c = 78.726 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2016-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.52 30 100 0.09 0.059 8.8 3.2 47608
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.525 1.565
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.52 30 45172 2407 97.13 0.14062 0.1382 0.1386 0.18589 0.1865 RANDOM 15.837
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 -0.97 0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.421 r_dihedral_angle_4_deg 19.031 r_sphericity_free 18.11 r_dihedral_angle_3_deg 13.345 r_sphericity_bonded 7.216 r_dihedral_angle_1_deg 6.041 r_long_range_B_other 3.252 r_long_range_B_refined 3.246 r_scangle_other 3.159 r_rigid_bond_restr 3.151
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.421 r_dihedral_angle_4_deg 19.031 r_sphericity_free 18.11 r_dihedral_angle_3_deg 13.345 r_sphericity_bonded 7.216 r_dihedral_angle_1_deg 6.041 r_long_range_B_other 3.252 r_long_range_B_refined 3.246 r_scangle_other 3.159 r_rigid_bond_restr 3.151 r_scbond_it 2.98 r_scbond_other 2.979 r_mcangle_other 2.144 r_mcangle_it 2.136 r_angle_refined_deg 1.909 r_mcbond_it 1.845 r_mcbond_other 1.825 r_angle_other_deg 1.068 r_chiral_restr 0.119 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2521 Nucleic Acid Atoms Solvent Atoms 313 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing