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Structure of A3_bGFPD, an artificial bi-domain protein based on two different alphaRep domains : A3 and a GFP binding domain (bGFPD)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3LTJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 1.6M Tri-sodium citrate
Crystal Properties Matthews coefficient Solvent content 2.41 48.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.94 α = 90 b = 89.03 β = 90 c = 143.61 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.970 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.79 47.869 99.6 0.206 0.214 0.997 12.95 12.759 10938 48.68
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.79 2.96 98 1.231 1.283 0.897 2.08 12.521
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3LTJ 2.79 44.51 10389 547 99.62 0.2088 0.2056 0.2125 0.2698 0.2781 RANDOM 61.873
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -7.41 -0.06 7.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.012 r_dihedral_angle_3_deg 17.705 r_dihedral_angle_4_deg 15.711 r_dihedral_angle_1_deg 5.714 r_angle_refined_deg 1.339 r_angle_other_deg 0.961 r_chiral_restr 0.075 r_bond_refined_d 0.01 r_bond_other_d 0.006 r_gen_planes_refined 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.012 r_dihedral_angle_3_deg 17.705 r_dihedral_angle_4_deg 15.711 r_dihedral_angle_1_deg 5.714 r_angle_refined_deg 1.339 r_angle_other_deg 0.961 r_chiral_restr 0.075 r_bond_refined_d 0.01 r_bond_other_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2829 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction MOLREP phasing XDS data reduction