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HA1.7 Human T-Cell Receptor specific for Influenza virus epitope PKYVKQNTLKLAT presented by Human Leukocyte Antigen HLA-DR0101
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6EH8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291 0.2M KSCN,0.1M Bis-Tris, 20% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.53 51.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.53 α = 90 b = 49.88 β = 94.26 c = 72.89 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2011-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.38 69.34 98.8 0.065 0.098 9.9 3.5 19994
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.38 2.44 99.6 1.101 1.638 2.1 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6EH8 2.38 69.34 18937 1019 98.54 0.22493 0.22195 0.27844 0.2873 RANDOM 67.137
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.49 -0.91 3.37 -2.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.07 r_dihedral_angle_4_deg 21.5 r_dihedral_angle_3_deg 21.005 r_dihedral_angle_1_deg 8.596 r_long_range_B_refined 4.76 r_long_range_B_other 4.759 r_angle_refined_deg 1.939 r_angle_other_deg 1.087 r_mcangle_it 1.078 r_mcangle_other 1.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.07 r_dihedral_angle_4_deg 21.5 r_dihedral_angle_3_deg 21.005 r_dihedral_angle_1_deg 8.596 r_long_range_B_refined 4.76 r_long_range_B_other 4.759 r_angle_refined_deg 1.939 r_angle_other_deg 1.087 r_mcangle_it 1.078 r_mcangle_other 1.078 r_scangle_other 0.907 r_scbond_it 0.751 r_mcbond_it 0.598 r_mcbond_other 0.598 r_scbond_other 0.555 r_chiral_restr 0.114 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3505 Nucleic Acid Atoms Solvent Atoms 31 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement xia2 data reduction XDS data reduction SCALA data scaling PHASER phasing