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HA1.7 Human T-Cell Receptor specific for Influenza virus epitope PKYVKQNTLKLAT presented by Human Leukocyte Antigen HLA-DR0101
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6EH8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 20% PEG 8K, 0.1 M Tris, 0.2M NH4SO4
Crystal Properties Matthews coefficient Solvent content 2.57 52.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70 α = 90 b = 50.24 β = 93.31 c = 73.17 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2011-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.98 36.52 98.8 0.096 0.132 11.6 4 10488
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.98 3.06 99.5 0.54 0.736 2.3 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6EH8 2.98 36.52 9958 502 98.79 0.20545 0.20074 0.2044 0.29906 0.2946 RANDOM 57.738
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.32 1.11 -1.4 2.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.396 r_dihedral_angle_3_deg 21.569 r_dihedral_angle_4_deg 20.624 r_dihedral_angle_1_deg 9.944 r_long_range_B_refined 2.97 r_long_range_B_other 2.97 r_angle_refined_deg 1.957 r_angle_other_deg 1.11 r_mcangle_it 1.096 r_mcangle_other 1.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.396 r_dihedral_angle_3_deg 21.569 r_dihedral_angle_4_deg 20.624 r_dihedral_angle_1_deg 9.944 r_long_range_B_refined 2.97 r_long_range_B_other 2.97 r_angle_refined_deg 1.957 r_angle_other_deg 1.11 r_mcangle_it 1.096 r_mcangle_other 1.096 r_scangle_other 0.891 r_mcbond_it 0.616 r_mcbond_other 0.616 r_scbond_it 0.583 r_scbond_other 0.504 r_chiral_restr 0.108 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3508 Nucleic Acid Atoms Solvent Atoms 19 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement XDS data reduction xia2 data reduction SCALA data scaling PHASER phasing