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Complex of human Cu,Zn SOD1 with the human copper chaperone for SOD1 in a compact conformation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6FOL 6FOL, 2RSQ experimental model PDB 2RSQ 6FOL, 2RSQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1 M PCTP buffer pH 9.0, 20% (w/v) PEG 3350.
Crystal Properties Matthews coefficient Solvent content 2.48 50.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 181.054 α = 90 b = 181.054 β = 90 c = 141.102 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.97857 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.94 49.01 100 0.165 8.5 5.9 110021 53.95
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.94 3.1 100 0.944 1.9 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6FOL, 2RSQ 3 49.01 98527 5115 100 0.192 0.189 0.1937 0.23 0.2303 RANDOM 73.96
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.01 0.5 1.01 -3.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.103 r_dihedral_angle_3_deg 13.042 r_dihedral_angle_4_deg 10.603 r_dihedral_angle_1_deg 5.747 r_long_range_B_refined 2.566 r_long_range_B_other 2.566 r_mcangle_it 1.254 r_mcangle_other 1.254 r_angle_refined_deg 1.15 r_angle_other_deg 0.854
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.103 r_dihedral_angle_3_deg 13.042 r_dihedral_angle_4_deg 10.603 r_dihedral_angle_1_deg 5.747 r_long_range_B_refined 2.566 r_long_range_B_other 2.566 r_mcangle_it 1.254 r_mcangle_other 1.254 r_angle_refined_deg 1.15 r_angle_other_deg 0.854 r_scangle_other 0.827 r_mcbond_it 0.673 r_mcbond_other 0.673 r_scbond_it 0.416 r_scbond_other 0.415 r_chiral_restr 0.066 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 33101 Nucleic Acid Atoms Solvent Atoms 75 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing