☰ Navigation Tabs
X-ray structure of homo sapiens Fumarylacetoacetate hydrolase domain containing protein 1 (FAHD1) in complex with inhibitor oxalate at 1.94A resolution.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 10% PEG4000, 50mM MgCl2, 100mM HEPES pH7.5
Crystal Properties Matthews coefficient Solvent content 2.8 56.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.984 α = 90 b = 116.679 β = 89.94 c = 125.753 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2016-11-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.966 ESRF MASSIF-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 100 94.3 0.136 0.991 6.43 2.29 154275
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 2.05 1.005 0.583
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.94 85.53 146296 7965 94.15 0.1824 0.18093 0.1844 0.20826 0.2125 RANDOM 29.808
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.55 -0.78 2.05 4.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.383 r_dihedral_angle_3_deg 14.551 r_dihedral_angle_4_deg 13.141 r_long_range_B_refined 7.988 r_long_range_B_other 7.988 r_dihedral_angle_1_deg 7.209 r_scangle_other 6.241 r_mcangle_it 4.578 r_mcangle_other 4.578 r_scbond_it 4.355
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.383 r_dihedral_angle_3_deg 14.551 r_dihedral_angle_4_deg 13.141 r_long_range_B_refined 7.988 r_long_range_B_other 7.988 r_dihedral_angle_1_deg 7.209 r_scangle_other 6.241 r_mcangle_it 4.578 r_mcangle_other 4.578 r_scbond_it 4.355 r_scbond_other 4.355 r_mcbond_it 3.496 r_mcbond_other 3.494 r_angle_refined_deg 1.624 r_angle_other_deg 1.022 r_chiral_restr 0.093 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13467 Nucleic Acid Atoms Solvent Atoms 841 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing