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Structure of S. cerevisiae Methylenetetrahydrofolate reductase 1, catalytic domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2M sodium/potassium tartrate, 20% PEG3350
Crystal Properties Matthews coefficient Solvent content 3.24 62.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.65 α = 90 b = 54.53 β = 90 c = 61.92 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92819 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.56 61.76 99.7 0.191 0.066 11.4 8.1 53602
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.56 1.59 99.5 1.593 0.534 0.523 1.3 8.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.56 22.75 50840 2714 98.95 0.1537 0.1518 0.1904 0.1842 RANDOM 19.947
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 0.21 -0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.69 r_sphericity_free 21.596 r_dihedral_angle_4_deg 17.059 r_dihedral_angle_3_deg 11.84 r_sphericity_bonded 6.37 r_dihedral_angle_1_deg 5.395 r_angle_refined_deg 1.435 r_rigid_bond_restr 1.256 r_angle_other_deg 0.96 r_chiral_restr 0.081
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.69 r_sphericity_free 21.596 r_dihedral_angle_4_deg 17.059 r_dihedral_angle_3_deg 11.84 r_sphericity_bonded 6.37 r_dihedral_angle_1_deg 5.395 r_angle_refined_deg 1.435 r_rigid_bond_restr 1.256 r_angle_other_deg 0.96 r_chiral_restr 0.081 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2337 Nucleic Acid Atoms Solvent Atoms 258 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction xia2 data reduction PHASER phasing