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Mono- and bivalent 14-3-3 inhibitors for characterizing supramolecular lysine-PEG interactions in proteins
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3NKX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277.15 0.18 M Magnesium chloride,
0.09 M Sodium HEPES pH 7.5
10%(v/v) Glycerol
27%(v/v) Isopropanol
Crystal Properties Matthews coefficient Solvent content 4.01 69.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.999 α = 90 b = 102.992 β = 90 c = 113.875 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.978540 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.12 44.66 99.3 0.104 0.108 0.997 13.94 13.236 48590 57.308
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.12 2.25 95.8 1.394 1.45 0.696 1.57 12.963
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3NKX 2.12 44.66 46098 2426 99.31 0.2177 0.2162 0.2168 0.2463 0.2474 RANDOM 55.208
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 2.68 -2.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.688 r_dihedral_angle_4_deg 16.131 r_dihedral_angle_3_deg 13.567 r_dihedral_angle_1_deg 5.084 r_angle_refined_deg 1.084 r_angle_other_deg 1.013 r_chiral_restr 0.052 r_bond_refined_d 0.007 r_bond_other_d 0.003 r_gen_planes_refined 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.688 r_dihedral_angle_4_deg 16.131 r_dihedral_angle_3_deg 13.567 r_dihedral_angle_1_deg 5.084 r_angle_refined_deg 1.084 r_angle_other_deg 1.013 r_chiral_restr 0.052 r_bond_refined_d 0.007 r_bond_other_d 0.003 r_gen_planes_refined 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3562 Nucleic Acid Atoms Solvent Atoms 244 Heterogen Atoms 112
Software Software Software Name Purpose XDS data reduction XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction