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Structure of FAE solved by SAD from data collected at the peak of the Selenium absorption edge on ID30B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.1 M HEPES, 50 mM CdSO4, 5% (v/v) glycerol, and 1 M Na-acetate
Crystal Properties Matthews coefficient Solvent content 3.16 61.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.023 α = 90 b = 112.023 β = 90 c = 65.865 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M Be CRL (vertical) and Rh Elliptical mirror (horizontal) 2017-04-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.979 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 79.21 96.3 0.057 0.091 0.041 0.997 11.2 2.4 46013 24.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 96.1 1.39 1.83 0.84 0.318 0.9 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 79.21 43496 2487 98.66 0.16118 0.16024 0.1928 0.17786 0.2041 RANDOM 20.906
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 0.37 -0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.89 r_dihedral_angle_4_deg 17.183 r_dihedral_angle_3_deg 11.16 r_dihedral_angle_1_deg 5.964 r_long_range_B_refined 5.209 r_long_range_B_other 5.16 r_scangle_other 2.51 r_scbond_it 2.067 r_scbond_other 1.917 r_angle_refined_deg 1.695
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.89 r_dihedral_angle_4_deg 17.183 r_dihedral_angle_3_deg 11.16 r_dihedral_angle_1_deg 5.964 r_long_range_B_refined 5.209 r_long_range_B_other 5.16 r_scangle_other 2.51 r_scbond_it 2.067 r_scbond_other 1.917 r_angle_refined_deg 1.695 r_mcangle_it 1.619 r_mcangle_other 1.619 r_mcbond_it 1.035 r_mcbond_other 1.034 r_angle_other_deg 1.026 r_chiral_restr 0.109 r_bond_refined_d 0.02 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2290 Nucleic Acid Atoms Solvent Atoms 194 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement MxCuBE data collection XDS data reduction Aimless data scaling CRANK2 phasing