6FJ4

Structure of FAE solved by SAD from data collected at the peak of the Selenium absorption edge on ID30B


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52930.1 M HEPES, 50 mM CdSO4, 5% (v/v) glycerol, and 1 M Na-acetate
Crystal Properties
Matthews coefficientSolvent content
3.1661.06

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 112.023α = 90
b = 112.023β = 90
c = 65.865γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6MBe CRL (vertical) and Rh Elliptical mirror (horizontal)2017-04-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID30B0.979ESRFID30B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.779.2196.30.0570.0910.0410.99711.22.44601324.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7396.11.391.830.840.3180.92.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.779.2143496248798.660.161180.160240.17786RANDOM20.906
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.370.37-0.73
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.89
r_dihedral_angle_4_deg17.183
r_dihedral_angle_3_deg11.16
r_dihedral_angle_1_deg5.964
r_long_range_B_refined5.209
r_long_range_B_other5.16
r_scangle_other2.51
r_scbond_it2.067
r_scbond_other1.917
r_angle_refined_deg1.695
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.89
r_dihedral_angle_4_deg17.183
r_dihedral_angle_3_deg11.16
r_dihedral_angle_1_deg5.964
r_long_range_B_refined5.209
r_long_range_B_other5.16
r_scangle_other2.51
r_scbond_it2.067
r_scbond_other1.917
r_angle_refined_deg1.695
r_mcangle_it1.619
r_mcangle_other1.619
r_mcbond_it1.035
r_mcbond_other1.034
r_angle_other_deg1.026
r_chiral_restr0.109
r_bond_refined_d0.02
r_gen_planes_refined0.009
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2290
Nucleic Acid Atoms
Solvent Atoms194
Heterogen Atoms22

Software

Software
Software NamePurpose
REFMACrefinement
MxCuBEdata collection
XDSdata reduction
Aimlessdata scaling
CRANK2phasing