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Structure of the Ldtfm-avibactam carbamoyl enzyme
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZAT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 Potassium nitrate, PEG 3350
Crystal Properties Matthews coefficient Solvent content 5.58 77.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 208.54 α = 90 b = 131.97 β = 90.14 c = 70.09 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.97857 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.69 48.04 99 0.13 0.99 7.62 3.41 52058 70
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.69 2.85 96.2 1.24 0.72 1.03 3.39
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1ZAT 2.69 48.04 49437 2602 99.01 0.1987 0.1971 0.2046 0.2282 0.2324 RANDOM 83.319
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.87 0.12 3.13 -7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.453 r_dihedral_angle_4_deg 20.92 r_dihedral_angle_3_deg 19.298 r_dihedral_angle_1_deg 7.11 r_angle_refined_deg 2.046 r_angle_other_deg 1.075 r_chiral_restr 0.103 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.453 r_dihedral_angle_4_deg 20.92 r_dihedral_angle_3_deg 19.298 r_dihedral_angle_1_deg 7.11 r_angle_refined_deg 2.046 r_angle_other_deg 1.075 r_chiral_restr 0.103 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5940 Nucleic Acid Atoms Solvent Atoms 101 Heterogen Atoms 151
Software Software Software Name Purpose XDS data reduction REFMAC refinement PDB_EXTRACT data extraction XDS data scaling PHASER phasing