☰ Navigation Tabs
Crystal structure of the ANX1 ectodomain from Arabidopsis thaliana
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 27.5% PEG 3350, 0.1M HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.77 55.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.991 α = 88.54 b = 68.745 β = 74.93 c = 70.046 γ = 71.74
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2017-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 0.991876 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 47.27 98.4 0.057 0.06 1 17.93 10.3 151428 -3 31.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.48 1.52 95.6 2.06 2.17 0.68 1.2 10.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.48 47.27 143968 7518 98.47 0.17221 0.17115 0.1807 0.19214 0.201 RANDOM 32.54
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.64 0.06 -1.59 -1.23 -0.1 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.515 r_dihedral_angle_4_deg 17.148 r_dihedral_angle_3_deg 11.286 r_dihedral_angle_1_deg 6.419 r_long_range_B_refined 5.408 r_long_range_B_other 5.24 r_scangle_other 1.882 r_mcangle_it 1.597 r_mcangle_other 1.597 r_angle_refined_deg 1.482
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.515 r_dihedral_angle_4_deg 17.148 r_dihedral_angle_3_deg 11.286 r_dihedral_angle_1_deg 6.419 r_long_range_B_refined 5.408 r_long_range_B_other 5.24 r_scangle_other 1.882 r_mcangle_it 1.597 r_mcangle_other 1.597 r_angle_refined_deg 1.482 r_scbond_it 1.156 r_scbond_other 1.154 r_mcbond_it 0.938 r_mcbond_other 0.937 r_angle_other_deg 0.919 r_chiral_restr 0.084 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6046 Nucleic Acid Atoms Solvent Atoms 743 Heterogen Atoms 185
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHARP phasing