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Structure of Hormoconis resinae Glucoamylase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GLM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 tacsimate
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 137.975 α = 90 b = 149.827 β = 90 c = 192.349 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2010-05-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.6 59.58 81.6 0.142 10.5 6.5 38033
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.6 3.76 0.675
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1GLM 3.6 59.58 35198 1887 79.07 0.2647 0.2642 0.2649 0.2731 0.2697 RANDOM 54.06
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.98 -0.6 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.63 r_dihedral_angle_3_deg 16.746 r_dihedral_angle_4_deg 11.873 r_dihedral_angle_1_deg 6.448 r_angle_other_deg 3.864 r_mcangle_it 1.435 r_angle_refined_deg 1.223 r_mcbond_it 0.785 r_mcbond_other 0.785 r_chiral_restr 0.068
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.63 r_dihedral_angle_3_deg 16.746 r_dihedral_angle_4_deg 11.873 r_dihedral_angle_1_deg 6.448 r_angle_other_deg 3.864 r_mcangle_it 1.435 r_angle_refined_deg 1.223 r_mcbond_it 0.785 r_mcbond_other 0.785 r_chiral_restr 0.068 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8956 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 429
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction SCALA data scaling MOLREP phasing