6FGM
The NMR solution structure of the peptide AC12 from Hypsiboas raniceps
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 1.0 mM NA ac12 | 93% H2O/7% D2O | NA | 4.0 | AMBIENT atm | 298 | Bruker AVANCE III 700 |
2 | 2D 1H-1H TOCSY | 1.0 mM NA ac12 | 93% H2O/7% D2O | NA | 4.0 | AMBIENT atm | 298 | Bruker AVANCE III 700 |
3 | 2D 1H-1H ROESY | 1.0 mM NA ac12 | 93% H2O/7% D2O | NA | 4.0 | AMBIENT atm | 298 | Bruker AVANCE III 700 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 400 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure calculation | CYANA | 3.0 | Guntert, P |
2 | collection | TopSpin | 3.0 | Bruker Biospin |
3 | peak picking | Sparky | NMRFAM-SPARKY 1.412 | Goddard TD & Kneller DG (2008) SPARKY 3. University of California, San Francisco. Bioinformatics. 2015 Apr 15; 31(8):1325-7. Epub 2014 Dec 12 NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy. |
4 | processing | TopSpin | 3.0 | Bruker Biospin |