X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2QIF 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293200 mM MgCl2, 100 mM HEPES pH 7.0, 20%w/v PEG 6000
Crystal Properties
Matthews coefficientSolvent content
2.3447.37

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 26.619α = 90
b = 49.46β = 90
c = 102.829γ = 90
Symmetry
Space GroupP 2 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2015-11-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.979DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.351.4199.60.99910.54.634140
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.3299.40.4621.64.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2QIF1.351.4132427166899.240.166550.164730.20194RANDOM17.914
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.321.12-1.44
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.552
r_sphericity_free16.8
r_dihedral_angle_3_deg11.828
r_sphericity_bonded8.616
r_dihedral_angle_1_deg5.337
r_scangle_other3.219
r_long_range_B_other3.145
r_long_range_B_refined3.143
r_scbond_it2.838
r_scbond_other2.824
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.552
r_sphericity_free16.8
r_dihedral_angle_3_deg11.828
r_sphericity_bonded8.616
r_dihedral_angle_1_deg5.337
r_scangle_other3.219
r_long_range_B_other3.145
r_long_range_B_refined3.143
r_scbond_it2.838
r_scbond_other2.824
r_rigid_bond_restr2.775
r_mcangle_it2.137
r_mcangle_other2.136
r_mcbond_other1.758
r_mcbond_it1.757
r_angle_refined_deg1.745
r_angle_other_deg0.962
r_chiral_restr0.104
r_bond_refined_d0.017
r_gen_planes_refined0.008
r_bond_other_d0.005
r_gen_planes_other0.001
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms988
Nucleic Acid Atoms
Solvent Atoms97
Heterogen Atoms7

Software

Software
Software NamePurpose
GDAdata collection
MOSFLMdata reduction
Aimlessdata scaling
PHASERphasing
REFMACrefinement
Cootmodel building
MolProbitymodel building