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Unc-51-Like Kinase 3 (ULK3) In Complex With Momelotinib
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4WNP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 0.1 M HEPES pH 7.5, 0.2 M MgCl2, 30% 2-propanol
Crystal Properties Matthews coefficient Solvent content 2.79 55.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.836 α = 90 b = 75.836 β = 90 c = 214.691 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-03-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9686 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 214.69 100 0.14 17 18.7 12814
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.59 100 1.636 2.2 19.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4wnp 2.55 65.68 12141 606 99.99 0.23379 0.23043 0.2344 0.30109 0.3052 RANDOM 58.642
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.41 0.7 1.41 -4.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.124 r_dihedral_angle_4_deg 21.994 r_dihedral_angle_3_deg 15.654 r_long_range_B_refined 9.179 r_long_range_B_other 9.177 r_dihedral_angle_1_deg 7.255 r_scangle_other 6.952 r_mcangle_other 6.927 r_mcangle_it 6.926 r_mcbond_it 4.847
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.124 r_dihedral_angle_4_deg 21.994 r_dihedral_angle_3_deg 15.654 r_long_range_B_refined 9.179 r_long_range_B_other 9.177 r_dihedral_angle_1_deg 7.255 r_scangle_other 6.952 r_mcangle_other 6.927 r_mcangle_it 6.926 r_mcbond_it 4.847 r_mcbond_other 4.845 r_scbond_it 4.818 r_scbond_other 4.816 r_angle_refined_deg 1.683 r_angle_other_deg 1.01 r_chiral_restr 0.09 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2029 Nucleic Acid Atoms Solvent Atoms 7 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing