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Structural and functional characterisation of Frataxin (FXN) like protein from Chaetomium thermophilum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 2.4 M Sodium malonate and 0.1 M BIS-TRIS propane pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.22 44.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.058 α = 90 b = 89.058 β = 90 c = 185.62 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.96861 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 80.29 100 0.079 1 15.1 1 48810 33.45
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.03 2.106 100 0.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.03 80.29 46368 2444 99.96 0.22079 0.21876 0.2268 0.25956 0.2606 RANDOM 39.341
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.95 0.95 -1.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.955 r_dihedral_angle_4_deg 19.724 r_dihedral_angle_3_deg 12.862 r_long_range_B_other 7.694 r_long_range_B_refined 7.692 r_dihedral_angle_1_deg 6.958 r_scangle_other 5.848 r_mcangle_it 4.842 r_mcangle_other 4.842 r_scbond_it 4.068
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.955 r_dihedral_angle_4_deg 19.724 r_dihedral_angle_3_deg 12.862 r_long_range_B_other 7.694 r_long_range_B_refined 7.692 r_dihedral_angle_1_deg 6.958 r_scangle_other 5.848 r_mcangle_it 4.842 r_mcangle_other 4.842 r_scbond_it 4.068 r_scbond_other 4.043 r_angle_other_deg 3.813 r_mcbond_it 3.433 r_mcbond_other 3.42 r_angle_refined_deg 1.654 r_chiral_restr 0.102 r_bond_refined_d 0.015 r_gen_planes_other 0.011 r_gen_planes_refined 0.008 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5209 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing