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Carboxypeptidase T mutant L211Q with Sulphamoil Arginine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3QNV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIQUID DIFFUSION 296 1,4 SA
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 157.96 α = 90 b = 157.96 β = 90 c = 104.85 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2016-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.8 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 99.99 0.107 4.4391 20.62 60927
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 100 0.26 2.75 20.89
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3QNV 1.9 29.85 57912 2961 99.93 0.12794 0.12696 0.1399 0.14715 0.1565 RANDOM 14.909
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.997 r_sphericity_free 18.867 r_dihedral_angle_4_deg 15.264 r_dihedral_angle_3_deg 12.189 r_dihedral_angle_1_deg 6.59 r_sphericity_bonded 3.848 r_long_range_B_refined 2.026 r_long_range_B_other 1.726 r_angle_refined_deg 1.313 r_scangle_other 1.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.997 r_sphericity_free 18.867 r_dihedral_angle_4_deg 15.264 r_dihedral_angle_3_deg 12.189 r_dihedral_angle_1_deg 6.59 r_sphericity_bonded 3.848 r_long_range_B_refined 2.026 r_long_range_B_other 1.726 r_angle_refined_deg 1.313 r_scangle_other 1.11 r_scbond_it 1.101 r_scbond_other 1.032 r_mcangle_it 0.974 r_mcangle_other 0.974 r_rigid_bond_restr 0.96 r_angle_other_deg 0.959 r_mcbond_it 0.788 r_mcbond_other 0.784 r_chiral_restr 0.083 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2582 Nucleic Acid Atoms Solvent Atoms 343 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing