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Antibody derived (Abd-8) small molecule binding to KRAS.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 291 8-15% w/v Polyethylene glycol 3350 and 0.2M lithium citrate
Crystal Properties Matthews coefficient Solvent content 2.52 51.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.19 α = 90 b = 118.424 β = 90 c = 156.751 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2017-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.966 ESRF MASSIF-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 94.49 99.2 0.151 0.193 0.119 0.985 5 4.5 65992
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 87.3 0.78 0.99 0.61 0.51 1.8 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 94.49 57318 3033 99.68 0.22698 0.22582 0.2333 0.24915 0.2562 RANDOM 44.747
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.133 r_dihedral_angle_3_deg 14.744 r_dihedral_angle_4_deg 14.727 r_long_range_B_refined 10.897 r_long_range_B_other 10.897 r_scangle_other 8.432 r_dihedral_angle_1_deg 5.712 r_mcangle_it 5.674 r_mcangle_other 5.674 r_scbond_it 5.347
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.133 r_dihedral_angle_3_deg 14.744 r_dihedral_angle_4_deg 14.727 r_long_range_B_refined 10.897 r_long_range_B_other 10.897 r_scangle_other 8.432 r_dihedral_angle_1_deg 5.712 r_mcangle_it 5.674 r_mcangle_other 5.674 r_scbond_it 5.347 r_scbond_other 5.346 r_mcbond_it 3.735 r_mcbond_other 3.734 r_angle_refined_deg 1.698 r_angle_other_deg 0.97 r_chiral_restr 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7970 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms 314
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing