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Structure of Mycobacterium smegmatis RNA polymerase core
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.009 r_dihedral_angle_3_deg 15.33 r_dihedral_angle_4_deg 12.958 r_long_range_B_other 10.219 r_long_range_B_refined 10.218 r_dihedral_angle_1_deg 6.15 r_mcangle_it 5.352 r_mcangle_other 5.352 r_scangle_other 2.978 r_mcbond_it 2.822
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.009 r_dihedral_angle_3_deg 15.33 r_dihedral_angle_4_deg 12.958 r_long_range_B_other 10.219 r_long_range_B_refined 10.218 r_dihedral_angle_1_deg 6.15 r_mcangle_it 5.352 r_mcangle_other 5.352 r_scangle_other 2.978 r_mcbond_it 2.822 r_mcbond_other 2.822 r_scbond_it 1.311 r_scbond_other 1.311 r_angle_refined_deg 1.277 r_angle_other_deg 1.063 r_chiral_restr 0.044 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_gen_planes_other 0.002 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Mycobacterium smegmatis RNA polymerase Sigma-A holoenzyme
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 163000 Reported Resolution (Å) 3.81 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space RECIPROCAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON III (4k x 4k) Electron Dose (electrons/Å**2) 52
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI POLARA 300 Minimum Defocus (nm) 1500 Maximum Defocus (nm) 3800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 78000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL FITTING Coot 0.8.3 MODEL REFINEMENT REFMAC 5.8 RECONSTRUCTION RELION 2.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING ONLY