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Crystal structure of olive flounder [Paralichthys olivaceus] interferon gamma at 2.3 Angstrom resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 Protein buffer:
100 mM citrate buffer, pH 6.0
Reservoir:
3 M NaCl
0.1 M Bis-Tris, pH 5.5
Crystal Properties Matthews coefficient Solvent content 2.86 57.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.238 α = 90 b = 79.721 β = 90 c = 94.6 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-05-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.296 49.6 99.6 0.102 0.11 0.042 0.999 13.5 12.9 20255 -3 51
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.296 2.38 97.4 2.711 2.956 1.163 0.559 0.9 11.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.296 49.59 20204 978 99.59 0.22898 0.22647 0.29666 0.237 Random selection 76.012
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.02 -1.9 -4.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.219 r_dihedral_angle_3_deg 19.242 r_dihedral_angle_4_deg 16.981 r_long_range_B_other 13.043 r_long_range_B_refined 13.041 r_scangle_other 10.494 r_mcangle_other 8.202 r_mcangle_it 8.199 r_dihedral_angle_1_deg 6.792 r_scbond_it 6.738
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.219 r_dihedral_angle_3_deg 19.242 r_dihedral_angle_4_deg 16.981 r_long_range_B_other 13.043 r_long_range_B_refined 13.041 r_scangle_other 10.494 r_mcangle_other 8.202 r_mcangle_it 8.199 r_dihedral_angle_1_deg 6.792 r_scbond_it 6.738 r_scbond_other 6.704 r_mcbond_it 5.694 r_mcbond_other 5.691 r_angle_refined_deg 1.599 r_angle_other_deg 0.972 r_chiral_restr 0.077 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2248 Nucleic Acid Atoms Solvent Atoms 38 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHELXCD phasing