☰ Navigation Tabs
14-3-3 zeta in complex with the human Son of sevenless homolog 1 (SOS1)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QJB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298.15 0.1 M phosphate citrate pH 4.2, 36% (v/v) PEG 300
Crystal Properties Matthews coefficient Solvent content 2.08 41.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.059 α = 90 b = 93.14 β = 92.93 c = 74.519 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 193.15 PIXEL DECTRIS PILATUS 6M 2017-05-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 2.00 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 74.42 99.93 0.112 0.135 0.075 2.34 6.1 68382
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.949
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1QJB 1.9 74.42 68382 3615 99.93 0.21282 0.21003 0.2163 0.26732 0.271 RANDOM 27.173
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.66 -0.08 1.78 -1.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.246 r_dihedral_angle_4_deg 17.331 r_dihedral_angle_3_deg 16.398 r_long_range_B_refined 6.663 r_long_range_B_other 6.453 r_dihedral_angle_1_deg 6.247 r_scangle_other 4.616 r_mcangle_it 3.852 r_mcangle_other 3.852 r_scbond_it 3.068
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.246 r_dihedral_angle_4_deg 17.331 r_dihedral_angle_3_deg 16.398 r_long_range_B_refined 6.663 r_long_range_B_other 6.453 r_dihedral_angle_1_deg 6.247 r_scangle_other 4.616 r_mcangle_it 3.852 r_mcangle_other 3.852 r_scbond_it 3.068 r_scbond_other 3.067 r_mcbond_it 2.612 r_mcbond_other 2.61 r_angle_refined_deg 1.775 r_angle_other_deg 1.085 r_chiral_restr 0.104 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7110 Nucleic Acid Atoms Solvent Atoms 693 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling MOLREP phasing