X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3SL4 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.527714-16% (w/v) PEG 3350, 0.4 M ammonium sulphate
Crystal Properties
Matthews coefficientSolvent content
3.2161.67

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.55α = 90
b = 81.55β = 90
c = 255.87γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2017-06-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.97622DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.0447.4199.90.0710.0750.0240.99814.79.56400445.45
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.042.091001.5011.6050.5650.5451.38

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT3SL42.0485.4460884304299.940.200490.198860.23276RANDOM58.941
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.69-0.35-0.692.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.627
r_dihedral_angle_4_deg18.611
r_dihedral_angle_3_deg17.45
r_dihedral_angle_1_deg7.444
r_long_range_B_refined5.659
r_long_range_B_other5.659
r_scangle_other4.927
r_scbond_it3.605
r_scbond_other3.605
r_mcangle_it3.553
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.627
r_dihedral_angle_4_deg18.611
r_dihedral_angle_3_deg17.45
r_dihedral_angle_1_deg7.444
r_long_range_B_refined5.659
r_long_range_B_other5.659
r_scangle_other4.927
r_scbond_it3.605
r_scbond_other3.605
r_mcangle_it3.553
r_mcangle_other3.552
r_angle_refined_deg2.912
r_mcbond_it2.784
r_mcbond_other2.782
r_angle_other_deg1.536
r_chiral_restr0.249
r_bond_refined_d0.033
r_gen_planes_refined0.014
r_bond_other_d0.003
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5235
Nucleic Acid Atoms
Solvent Atoms56
Heterogen Atoms49

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
REFMACphasing