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Structure of h. salinarum RosR (vng0258) grown from NaBr
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other SAD derived model in NaCl
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 6.8 298 NaBr, MES, Ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.05 37.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.884 α = 90 b = 71.139 β = 110.334 c = 41.719 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2013-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.91908 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 39.12 97.4 0.112 0.123 0.05 0.991 18.5 6.2 43032 1.82 17.4188078183
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.79 80 0.577 0.669 0.327 1.45 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE SAD derived model in NaCl 1.75004310292 34.2783354663 1.93612010501 43032 2186 96.8600175569 0.172098550035 0.170094126367 0.1688 0.209013814378 0.2059 25.8986593944
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.5634602151 f_angle_d 0.589561088126 f_chiral_restr 0.0371181548246 f_bond_d 0.00308713472184 f_plane_restr 0.00278601810263
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1764 Nucleic Acid Atoms Solvent Atoms 267 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement PHENIX refinement XDS data reduction XDS data scaling PHASER phasing