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Crystal structure of DotM cytoplasmic domain (residues 153-380) SeMet derivative
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 0.1 M MES pH 6.0
0.15 M NH4SO4
25 % w/v PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.52 51.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118 α = 90 b = 118 β = 90 c = 66.4 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-12-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.979 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.14 50.01 99.5 0.253 0.97 9.11 13.2 29190
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.16 2.22 99.2 1.137 0.415 1.5 12.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.14 50.01 27700 1469 99.54 0.19303 0.1913 0.1927 0.22749 0.2294 RANDOM 31.303
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.81 0.41 0.81 -2.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.372 r_dihedral_angle_4_deg 22.206 r_dihedral_angle_3_deg 18.459 r_long_range_B_refined 8.5 r_long_range_B_other 8.49 r_dihedral_angle_1_deg 6.824 r_scangle_other 6.406 r_mcangle_it 4.361 r_mcangle_other 4.361 r_scbond_it 4.114
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.372 r_dihedral_angle_4_deg 22.206 r_dihedral_angle_3_deg 18.459 r_long_range_B_refined 8.5 r_long_range_B_other 8.49 r_dihedral_angle_1_deg 6.824 r_scangle_other 6.406 r_mcangle_it 4.361 r_mcangle_other 4.361 r_scbond_it 4.114 r_scbond_other 4.107 r_mcbond_it 2.72 r_mcbond_other 2.718 r_angle_refined_deg 2.084 r_angle_other_deg 1.158 r_chiral_restr 0.115 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3496 Nucleic Acid Atoms Solvent Atoms 131 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling BUCCANEER phasing