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Solution Structure of Rhabdopeptide NRPS Docking Domain Kj12C-NDD
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 200 uM [U-15N] Kj12CDD 90% H2O/10% D2O 100 mM 6.5 AMBIENT Pa 293 Bruker AVANCE 600 2 3D 1H-13C NOESY aliphatic 700 uM [U-13C; U-15N] Kj12CDD 90% H2O/10% D2O 100 mM 6.5 AMBIENT Pa 293 Bruker AVANCE 600 3 3D 1H-13C NOESY aromatic 700 uM [U-13C; U-15N] Kj12CDD 90% H2O/10% D2O 100 mM 6.5 AMBIENT Pa 293 Bruker AVANCE 600 4 3D HNCACB 700 uM [U-13C; U-15N] Kj12CDD 90% H2O/10% D2O 100 mM 6.5 AMBIENT Pa 293 Bruker AVANCE 800 5 3D HNCO 700 uM [U-13C; U-15N] Kj12CDD 90% H2O/10% D2O 100 mM 6.5 AMBIENT Pa 293 Bruker AVANCE 800 20 3D HN(CA)CO 700 uM [U-13C; U-15N] Kj12CDD 90% H2O/10% D2O 100 mM 6.5 AMBIENT Pa 293 Bruker AVANCE 800 19 3D HBHA(CO)NH 700 uM [U-13C; U-15N] Kj12CDD 90% H2O/10% D2O 100 mM 6.5 AMBIENT Pa 293 Bruker AVANCE 600 18 3D H(CCO)NH 700 uM [U-13C; U-15N] Kj12CDD 90% H2O/10% D2O 100 mM 6.5 AMBIENT Pa 293 Bruker AVANCE 800 17 3D (H)C(CCO)NH 700 uM [U-13C; U-15N] Kj12CDD 90% H2O/10% D2O 100 mM 6.5 AMBIENT Pa 293 Bruker AVANCE 800 16 3D HCCH-TOCSY 700 uM [U-13C; U-15N] Kj12CDD 90% H2O/10% D2O 100 mM 6.5 AMBIENT Pa 293 Bruker AVANCE 600 15 3D HCCH-TOCSY 700 uM [U-13C; U-15N] Kj12CDD 90% H2O/10% D2O 100 mM 6.5 AMBIENT Pa 293 Bruker AVANCE 600 14 2D 1H-13C HSQC aliphatic 700 uM [U-13C; U-15N] Kj12CDD 90% H2O/10% D2O 100 mM 6.5 AMBIENT Pa 293 Bruker AVANCE 600 13 2D 1H-13C HSQC aromatic 700 uM [U-13C; U-15N] Kj12CDD 90% H2O/10% D2O 100 mM 6.5 AMBIENT Pa 293 Bruker AVANCE 600 12 2D 1H-15N HSQC 200 uM [U-15N] Kj12CDD 90% H2O/10% D2O 100 mM 6.5 AMBIENT Pa 293 Bruker AVANCE 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 600 10 Bruker AVANCE 600 9 Bruker AVANCE 700 8 Bruker AVANCE 800 7 Bruker AVANCE 800 6 Bruker AVANCE 950
NMR Refinement Method Details Software Energy refinement and molecular dynamics simulation algorithm for biomolecules OPALp
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure calculation CYANA 3.97 Guentert 2 chemical shift assignment CARA Keller and Wuthrich 3 collection TopSpin Bruker Biospin 4 data analysis CcpNmr Analysis CCPN 5 peak picking UNIO'10 (ATNOS/CANDID (3) Herrmann, T.; uentert, P.; Wuethrich, K. J. Mol. Biol. 2002, 319, 209-227.
(4) Herrmann, T.; Guentert, P.; Wuethrich, K. J. Biomol. NMR 2002, 24, 171-189. 6 refinement OPALp Luginbuhl, Guntert, Billeter and Wuthrich