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Crystal structure of bat influenza A/H17N10 polymerase with viral RNA promoter and capped RNA primer
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4WSB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 281 0.1 M bicine pH 9.0, 17% MPD
Crystal Properties Matthews coefficient Solvent content 4.07 69.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 185.46 α = 90 b = 286.17 β = 93.27 c = 171.93 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.979 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.9 50 99.8 0.118 0.137 0.998 8.28 3.87 81025
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.9 4 98.9 1.24 1.44 0.539 0.93 3.87
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4WSB 3.9 50 77007 4018 99.73 0.20857 0.20668 0.2065 0.2453 0.2421 RANDOM 181.471
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -12.7 2.43 5.24 7.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.317 r_dihedral_angle_3_deg 14.533 r_dihedral_angle_4_deg 10.191 r_long_range_B_refined 9.513 r_long_range_B_other 9.513 r_mcangle_it 6.328 r_mcangle_other 6.328 r_scangle_other 5.644 r_dihedral_angle_1_deg 5.075 r_mcbond_it 3.694
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.317 r_dihedral_angle_3_deg 14.533 r_dihedral_angle_4_deg 10.191 r_long_range_B_refined 9.513 r_long_range_B_other 9.513 r_mcangle_it 6.328 r_mcangle_other 6.328 r_scangle_other 5.644 r_dihedral_angle_1_deg 5.075 r_mcbond_it 3.694 r_mcbond_other 3.693 r_scbond_it 3.141 r_scbond_other 3.14 r_angle_refined_deg 0.963 r_angle_other_deg 0.856 r_chiral_restr 0.055 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 35378 Nucleic Acid Atoms 1339 Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing