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The GH43, Beta 1,3 Galactosidase, BT3683 with galactose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other BT0265
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 20% PEG 3350
0.2 M Ammonium Formate
Crystal Properties Matthews coefficient Solvent content 2.24 45.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.38 α = 90 b = 136.38 β = 90 c = 53.44 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-02-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.97 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 68.19 99.5 11.5 5.4 36549
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT BT0265 1.76 68.19 34685 1860 99.52 0.17021 0.16803 0.1776 0.21231 0.222 RANDOM 30.166
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 0.15 0.3 -0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.206 r_dihedral_angle_3_deg 13.198 r_dihedral_angle_4_deg 8.925 r_dihedral_angle_1_deg 6.468 r_long_range_B_other 5.372 r_long_range_B_refined 5.37 r_scangle_other 4.016 r_scbond_it 2.631 r_scbond_other 2.631 r_mcangle_other 2.615
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.206 r_dihedral_angle_3_deg 13.198 r_dihedral_angle_4_deg 8.925 r_dihedral_angle_1_deg 6.468 r_long_range_B_other 5.372 r_long_range_B_refined 5.37 r_scangle_other 4.016 r_scbond_it 2.631 r_scbond_other 2.631 r_mcangle_other 2.615 r_mcangle_it 2.614 r_mcbond_it 1.903 r_mcbond_other 1.902 r_angle_refined_deg 1.508 r_angle_other_deg 0.958 r_chiral_restr 0.099 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2754 Nucleic Acid Atoms Solvent Atoms 268 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction Aimless data scaling PHASER phasing