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The GH43, Beta 1,3 Galactosidase, BT3683 with galactodeoxynojirimycin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 20% PEG 3350
0.2 M Ammonium Formate
Crystal Properties Matthews coefficient Solvent content 2.11 41.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.18 α = 114 b = 77.2 β = 101.78 c = 78.69 γ = 100.78
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2016-02-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.97 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 68.19 99.9 11.5 5.5 36549
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2 68.19 64330 3507 95.85 0.18526 0.18303 0.1902 0.22559 0.2287 RANDOM 23.755
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.11 -0.18 0.01 0.19 0.09 0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.502 r_dihedral_angle_3_deg 14.671 r_dihedral_angle_4_deg 11.026 r_dihedral_angle_1_deg 6.367 r_long_range_B_refined 4.785 r_long_range_B_other 4.785 r_scangle_other 3.265 r_mcangle_it 2.305 r_mcangle_other 2.305 r_scbond_it 2.057
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.502 r_dihedral_angle_3_deg 14.671 r_dihedral_angle_4_deg 11.026 r_dihedral_angle_1_deg 6.367 r_long_range_B_refined 4.785 r_long_range_B_other 4.785 r_scangle_other 3.265 r_mcangle_it 2.305 r_mcangle_other 2.305 r_scbond_it 2.057 r_scbond_other 2.057 r_angle_refined_deg 1.553 r_mcbond_it 1.526 r_mcbond_other 1.526 r_angle_other_deg 0.962 r_chiral_restr 0.092 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8208 Nucleic Acid Atoms Solvent Atoms 618 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction Aimless data scaling PHASER phasing