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Reaction centre light harvesting complex 1 from Blc. virids
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 39.469 r_dihedral_angle_2_deg 35.143 r_dihedral_angle_3_deg 22.411 r_mcangle_it 21.459 r_dihedral_angle_4_deg 19.042 r_scbond_it 16.679 r_mcbond_it 13.3 r_dihedral_angle_1_deg 8.649 r_angle_refined_deg 3.468 r_chiral_restr 0.332
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 39.469 r_dihedral_angle_2_deg 35.143 r_dihedral_angle_3_deg 22.411 r_mcangle_it 21.459 r_dihedral_angle_4_deg 19.042 r_scbond_it 16.679 r_mcbond_it 13.3 r_dihedral_angle_1_deg 8.649 r_angle_refined_deg 3.468 r_chiral_restr 0.332 r_bond_refined_d 0.015 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Reaction centre-Light harvesting complex 1 (RC-LH1)
Specimen Preparation Sample Aggregation State CELL Vitrification Instrument LEICA EM GP Cryogen Name ETHANE Sample Vitrification Details Blot for 3.5 seconds.
Humidity: 99%
Temperature:4C.
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 267726 Reported Resolution (Å) 2.87 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol BACKBONE TRACE Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 2.25
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification 130000 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION 2.0 IMAGE ACQUISITION EPU CTF CORRECTION Gctf 1.06 MODEL FITTING Coot 0.8.7 INITIAL EULER ASSIGNMENT EMAN 2 FINAL EULER ASSIGNMENT RELION 2.0 CLASSIFICATION RELION 2.0 RECONSTRUCTION RELION 2.0 MODEL REFINEMENT REFMAC 5.7
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION gctf was used for CTF correction 267726 Protein was checked using negatively stained EM.