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CHEMOTAXIS PROTEIN CHEY FROM Pyrococcus horikoshiI
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3TMY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 295 0.1 M Tris-HCl 1.2 M sodium malonate
Crystal Properties Matthews coefficient Solvent content 2.9 58.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.16 α = 90 b = 65.73 β = 110.94 c = 72.89 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-08-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.9334 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 34 99.5 0.03 0.03 0.02 1 38 7.6 107515
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3TMY 2.62 34.038 14172 708 99.278 0.215 0.212 0.2126 0.2675 0.2654 91.73
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.336 1.269 -5.291 5.921
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.021 r_dihedral_angle_3_deg 17.2 r_dihedral_angle_4_deg 14.755 r_lrange_it 12.981 r_lrange_other 12.981 r_scangle_it 10.774 r_scangle_other 10.771 r_mcangle_other 9.57 r_mcangle_it 9.568 r_scbond_it 7.209
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.021 r_dihedral_angle_3_deg 17.2 r_dihedral_angle_4_deg 14.755 r_lrange_it 12.981 r_lrange_other 12.981 r_scangle_it 10.774 r_scangle_other 10.771 r_mcangle_other 9.57 r_mcangle_it 9.568 r_scbond_it 7.209 r_scbond_other 7.207 r_mcbond_it 6.804 r_mcbond_other 6.796 r_dihedral_angle_1_deg 6.174 r_angle_refined_deg 1.652 r_angle_other_deg 0.997 r_nbd_refined 0.216 r_nbd_other 0.192 r_symmetry_nbd_refined 0.175 r_nbtor_refined 0.164 r_symmetry_nbd_other 0.149 r_ncsr_local_group_3 0.113 r_ncsr_local_group_2 0.11 r_symmetry_xyhbond_nbd_refined 0.103 r_ncsr_local_group_1 0.103 r_chiral_restr 0.099 r_symmetry_nbtor_other 0.078 r_xyhbond_nbd_refined 0.049 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2688 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing