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CRYSTAL STRUCTURE OF THE HUMAN KINETOCHORE PROTEIN CENP-N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 277 6-16% PEG3350, pH 6.6-7.2
Crystal Properties Matthews coefficient Solvent content 3.18 55.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.3 α = 90 b = 87.3 β = 90 c = 81.1 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.97793 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.735 87.3 99.8 0.077 0.082 17.28 9.4 16182 -3 79.69
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.735 2.81 98.5 1.461 1.551 1.37
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.735 87.3 16182 812 99.75 0.208 0.2056 0.207 0.2538 0.2563 RANDOM 90.1837
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.69 -4.69 9.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.684 r_dihedral_angle_3_deg 18.462 r_dihedral_angle_4_deg 15.149 r_mcangle_it 5.918 r_dihedral_angle_1_deg 5.737 r_mcbond_it 3.48 r_scbond_it 3.476 r_angle_refined_deg 1.261 r_chiral_restr 0.089 r_bond_refined_d 0.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.684 r_dihedral_angle_3_deg 18.462 r_dihedral_angle_4_deg 15.149 r_mcangle_it 5.918 r_dihedral_angle_1_deg 5.737 r_mcbond_it 3.48 r_scbond_it 3.476 r_angle_refined_deg 1.261 r_chiral_restr 0.089 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3451 Nucleic Acid Atoms Solvent Atoms 21 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XSCALE data reduction PDB_EXTRACT data extraction XSCALE data scaling PHENIX phasing