☰ Navigation Tabs
Human galectin-3c in complex with a galactose derivative
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 19 MG/ML GALECTIN-3C, 100MM NACL, 29 % W/V PEG 4000, 0.4 M NASCN, 18 MM BETA-MERCAPTOETHANOL,0.02 % NAN3, 10 MM PHOSHATE, 100 MM MGCL2, 100 MM TRIS/HCL PH 7.5, 2.5 MM LIGAND
Crystal Properties Matthews coefficient Solvent content 2.11 41.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.08 α = 90 b = 58.44 β = 90 c = 62.99 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2014-12-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 1.000 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 30 99.6 0.033 29.7 7.3 42181
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.2 27.73 40063 2109 99.66 0.11376 0.11204 0.1112 0.14624 0.145 RANDOM 14.605
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 0.11 0.09
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 45.631 r_dihedral_angle_2_deg 35.161 r_sphericity_bonded 14.886 r_dihedral_angle_3_deg 14.006 r_dihedral_angle_4_deg 12.099 r_long_range_B_other 7.934 r_long_range_B_refined 7.93 r_dihedral_angle_1_deg 7.763 r_rigid_bond_restr 5.858 r_scangle_other 3.65
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 45.631 r_dihedral_angle_2_deg 35.161 r_sphericity_bonded 14.886 r_dihedral_angle_3_deg 14.006 r_dihedral_angle_4_deg 12.099 r_long_range_B_other 7.934 r_long_range_B_refined 7.93 r_dihedral_angle_1_deg 7.763 r_rigid_bond_restr 5.858 r_scangle_other 3.65 r_scbond_it 3.241 r_scbond_other 3.241 r_mcangle_other 2.999 r_mcangle_it 2.996 r_angle_refined_deg 2.384 r_mcbond_other 2.37 r_mcbond_it 2.365 r_angle_other_deg 1.114 r_chiral_restr 0.152 r_bond_refined_d 0.023 r_gen_planes_refined 0.012 r_gen_planes_other 0.004 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1109 Nucleic Acid Atoms Solvent Atoms 286 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing