6EMP
Solution structure of the LEDGF/p75 IBD - POGZ (aa 1370-1404) complex
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D HNCACB | 0.5 mM [U-13C; U-15N] LEDGF/p75 IBD-POGZ, 50 mM TRIS, 150 mM sodium chloride | 95% H2O/5% D2O | 200 mM | 7 | arbitraty Pa | 298 | Bruker AVANCE III 850 |
2 | 3D HNCO | 0.5 mM [U-13C; U-15N] LEDGF/p75 IBD-POGZ, 50 mM TRIS, 150 mM sodium chloride | 95% H2O/5% D2O | 200 mM | 7 | arbitraty Pa | 298 | Bruker AVANCE III 850 |
3 | 3D HCCH-TOCSY | 0.5 mM [U-13C; U-15N] LEDGF/p75 IBD-POGZ, 50 mM TRIS, 150 mM sodium chloride | 95% H2O/5% D2O | 200 mM | 7 | arbitraty Pa | 298 | Bruker AVANCE III 850 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 850 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | YASARA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 40 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | chemical shift assignment | Sparky | Goddard | |
3 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
4 | refinement | YASARA | Krieger |