☰ Navigation Tabs
Direct-evolutioned unspecific peroxygenase from Agrocybe aegerita, in complex with styrene
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OXU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 291 1.5 M sodium potassium phosphate pH 5.6, 3% MPD, soaking 20mM styrene, 20% methanol
Crystal Properties Matthews coefficient Solvent content 2.42 49.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.229 α = 90 b = 57.731 β = 109.7 c = 61.018 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M Kb mirros 2015-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.9795 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 45.19 95.7 0.091 0.049 0.996 10.6 4.1 38673
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.68 95.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 5OXU 1.65 45.19 36734 1933 95.62 0.15477 0.15377 0.17355 0.1711 RANDOM 15.924
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 0.44 -0.64 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.042 r_dihedral_angle_4_deg 16.326 r_dihedral_angle_3_deg 12.435 r_dihedral_angle_1_deg 5.733 r_long_range_B_refined 3.959 r_long_range_B_other 3.958 r_scangle_other 1.611 r_angle_refined_deg 1.302 r_mcangle_it 1.15 r_mcangle_other 1.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.042 r_dihedral_angle_4_deg 16.326 r_dihedral_angle_3_deg 12.435 r_dihedral_angle_1_deg 5.733 r_long_range_B_refined 3.959 r_long_range_B_other 3.958 r_scangle_other 1.611 r_angle_refined_deg 1.302 r_mcangle_it 1.15 r_mcangle_other 1.15 r_angle_other_deg 0.979 r_scbond_it 0.962 r_scbond_other 0.962 r_mcbond_it 0.664 r_mcbond_other 0.662 r_chiral_restr 0.08 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_gen_planes_other 0.007 r_bond_other_d 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2510 Nucleic Acid Atoms Solvent Atoms 324 Heterogen Atoms 146
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing