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Crystal structure of the BSD2 homolog of Arabidopsis thaliana
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 20 % PEG 10,000, 8 % ethylene glycol and 0.1 M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.97 58.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.708 α = 90 b = 55.708 β = 90 c = 48.131 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-02-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.2826 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 47.85 99.7 0.138 0.14 0.02 1 24.7 48.6 6226
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 1.95 95 4.852 4.904 0.699 0.742 47.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 30 5503 277 91.1 0.1901 0.1888 0.199 0.2158 0.2264 RANDOM 46.177
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.44 -0.44 0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.975 r_dihedral_angle_3_deg 11.53 r_dihedral_angle_1_deg 6.199 r_angle_refined_deg 1.814 r_angle_other_deg 1.051 r_dihedral_angle_4_deg 0.113 r_chiral_restr 0.112 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.975 r_dihedral_angle_3_deg 11.53 r_dihedral_angle_1_deg 6.199 r_angle_refined_deg 1.814 r_angle_other_deg 1.051 r_dihedral_angle_4_deg 0.113 r_chiral_restr 0.112 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 432 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms 3
Software Software Software Name Purpose Aimless data scaling SHELXDE phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction