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A de novo designed heptameric coiled coil CC-Hept-I24E
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4PNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293.15 0.3 M magnesium formate, 0.1 M bis-tris
Crystal Properties Matthews coefficient Solvent content 2.23 44.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.21 α = 90 b = 62.21 β = 90 c = 108.68 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS 6M-F 2017-07-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92819 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.52 40.78 99.1 0.019 0.999 21.3 25.5 33377 21.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.52 1.56 97.6 0.748 0.898 1.3 22.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4PNA 1.52 40.78 31688 1635 99.1 0.16372 0.16132 0.1622 0.20811 0.2088 RANDOM 35.281
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.23 1.23 -2.45
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 42.388 r_dihedral_angle_2_deg 30.087 r_sphericity_bonded 19.092 r_rigid_bond_restr 16.396 r_dihedral_angle_3_deg 16.276 r_dihedral_angle_4_deg 13.416 r_dihedral_angle_1_deg 11.61 r_scangle_other 9.153 r_long_range_B_refined 9.062 r_long_range_B_other 9.06
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 42.388 r_dihedral_angle_2_deg 30.087 r_sphericity_bonded 19.092 r_rigid_bond_restr 16.396 r_dihedral_angle_3_deg 16.276 r_dihedral_angle_4_deg 13.416 r_dihedral_angle_1_deg 11.61 r_scangle_other 9.153 r_long_range_B_refined 9.062 r_long_range_B_other 9.06 r_scbond_other 8.93 r_scbond_it 8.929 r_mcangle_it 6.183 r_mcangle_other 6.18 r_mcbond_it 6.065 r_mcbond_other 6.062 r_angle_refined_deg 2.583 r_angle_other_deg 1.44 r_chiral_restr 0.132 r_bond_refined_d 0.035 r_gen_planes_refined 0.014 r_gen_planes_other 0.009 r_bond_other_d 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1580 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing