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Glutamylation domain, TbtB, from thiomuracin biosynthesis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 0.2 M ammonium citrate pH 7.0, 15% PEG
Crystal Properties Matthews coefficient Solvent content 2.38 48.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.819 α = 90 b = 96.406 β = 98.76 c = 107.013 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2015-08-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.9786 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.151 105.764 100 0.065 0.028 0.999 15.1 6.4 48860
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.151 2.188 100 0.621 0.265 0.893 2.2 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.15 105.76 46363 2496 99.96 0.21704 0.21379 0.2214 0.27657 0.2767 RANDOM 50.606
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.6 -1.64 -1.16 -2.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.307 r_dihedral_angle_4_deg 17.753 r_dihedral_angle_3_deg 17.46 r_long_range_B_other 9.615 r_long_range_B_refined 9.61 r_dihedral_angle_1_deg 7.883 r_scangle_other 6.718 r_mcangle_it 6.185 r_mcangle_other 6.185 r_scbond_it 4.417
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.307 r_dihedral_angle_4_deg 17.753 r_dihedral_angle_3_deg 17.46 r_long_range_B_other 9.615 r_long_range_B_refined 9.61 r_dihedral_angle_1_deg 7.883 r_scangle_other 6.718 r_mcangle_it 6.185 r_mcangle_other 6.185 r_scbond_it 4.417 r_scbond_other 4.417 r_mcbond_other 4.135 r_mcbond_it 4.134 r_angle_refined_deg 1.774 r_angle_other_deg 1.062 r_chiral_restr 0.106 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6239 Nucleic Acid Atoms Solvent Atoms 230 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction autoPROC data scaling AutoSol phasing