☰ Navigation Tabs
Pif1 peptide bound to PCNA trimer
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 298 100 mM MIB (Qiagen), pH 9.0, 25% PEG1500
Crystal Properties Matthews coefficient Solvent content 2.72 54.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 169.346 α = 90 b = 41.795 β = 92.26 c = 146.968 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2015-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.9792 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 18 92.9 0.08 1 23 3.3 21636
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3 95.6 0.96 0.21 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 18 20619 1135 92.62 0.20387 0.20109 0.25264 0.2443 RANDOM 70
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.89 -0.73 3.47 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.355 r_dihedral_angle_3_deg 21.883 r_dihedral_angle_4_deg 19.478 r_long_range_B_refined 15.349 r_long_range_B_other 15.348 r_scangle_other 8.577 r_mcangle_other 8.302 r_mcangle_it 8.301 r_dihedral_angle_1_deg 8.168 r_scbond_it 5.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.355 r_dihedral_angle_3_deg 21.883 r_dihedral_angle_4_deg 19.478 r_long_range_B_refined 15.349 r_long_range_B_other 15.348 r_scangle_other 8.577 r_mcangle_other 8.302 r_mcangle_it 8.301 r_dihedral_angle_1_deg 8.168 r_scbond_it 5.27 r_scbond_other 5.269 r_mcbond_it 5.05 r_mcbond_other 5.045 r_angle_refined_deg 1.989 r_angle_other_deg 1.061 r_chiral_restr 0.107 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6258 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing